|
KMID : 0364820100460030262
|
|
Korean Journal of Microbiology
2010 Volume.46 No. 3 p.262 ~ p.269
|
|
|
Biodiversity and Phylogenetic Analysis of Streptomyces Collected from Bamboo Forest Soil
|
|
Lee Hyo-Jin
Whang Kyung-Sook
|
|
|
Abstract
|
|
|
To investigate a quantitative evaluation of the actinobacteria, we have collected samples from various kinds of bamboo forest soil. Each different layers contained 2.7×106-2.7×108 CFU/g of actinobacteria which was the highest in litter layers of Sasa boreali forest soil. We obtained 330 actinobacteria from different layers of bamboo forest soil; litter (100 strains), humus (70 strains), and rhizosphere soil (160 strains). Based on the colony morphology (aerial mycelium, substrate mycelium, and soluble pigment), isolates were divided into thirty-six groups and we selected 50 representative isolates. 16S rRNA gene sequence analysis showed Streptomyces was major actinobacteria (94%) and they were categorized as
cluster I (2 strains), II (35 strains), III (6 strains), and IV (7 strains), respectively. The diversity index of 50 Streptomyces collected from the bamboo forest soil was calculated with the Shannon-Wiener method. Bamboo litter showed higher diversity index level of 3.33 than that of humus and rhizosphere soil. Also, antibiotic activities of our isolates were investigated against Botrytis cinerea, Xanthomonas campestris, Xanthomonas axonopodis pv. vesicatoria, and Bacillus cereus and found in 74, 16, 25, and 24 strains, respectively.
|
|
|
KEYWORD
|
|
|
bamboo forest soil, biodiversity, phylogeny, Streptomyces
|
|
|
FullTexts / Linksout information
|
|
|
|
|
Listed journal information
|
|
|
|